SNP Profiles of LP 432 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	CG	CC	CT	AC	CT	GT	CT	CT	AA	AG	CT	AG
1._GC-07-069-4-05	CT	AA	CG	CC	CT	AC	CT	GT	CT	CT	AA	AG	CT	AG
2._RUQ_883	CT	AG	CG	CC	CT	AA	CC	TT	CT	CT	AA	AA	TT	AG
3._LP_4_/32_[POU]	CT	AA	GG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
4._LP_4_/32_[POU]	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
5._LP_4_/32_[POU]	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
6._LP_4_/32_[POU]	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
7._LP_4_/32_[POU]	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
8._LP_4_/32_[POU]	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
9._GC-07-069-4-05	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
10._GC-07-081-5-03	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
11._GC-07-081-5-03	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
12._GC-07-081-5-03	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
13._GC-07-081-5-03	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
14._RUQ_883	_	AA	CG	CC	_	_	_	TT	_	_	_	_	TT	AG
15._RUQ_883	_	_	CC	_	_	_	_	GT	_	CC	_	AG	_	AA
16._RUQ_883	AG	AA	CC	GG	AA	AA	GG	AA	_	_	AA	AA	AA	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	CG	CT	CT	CG	GG	AG	CT	AC	CC	GT	AC	AA
1._GC-07-069-4-05	TT	AA	CG	CT	CT	CG	GG	AG	CT	AC	CC	GT	AC	AA
2._RUQ_883	TT	AA	GG	TT	CC	CG	GT	AG	CT	CC	CC	GT	CC	AG
3._LP_4_/32_[POU]	TT	AA	GG	TT	CC	CG	GT	AG	CT	CC	CC	GT	CC	AG
4._LP_4_/32_[POU]	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
5._LP_4_/32_[POU]	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
6._LP_4_/32_[POU]	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
7._LP_4_/32_[POU]	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
8._LP_4_/32_[POU]	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
9._GC-07-069-4-05	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
10._GC-07-081-5-03	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
11._GC-07-081-5-03	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
12._GC-07-081-5-03	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
13._GC-07-081-5-03	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
14._RUQ_883	_	_	_	_	CC	CG	GT	_	CT	CC	CC	GT	CC	AG
15._RUQ_883	_	_	_	_	_	GG	GT	AA	_	CC	CG	_	AA	_
16._RUQ_883	AA	AA	GG	AA	GG	CG	AC	_	AG	CC	CC	AC	CC	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	AA	CC	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
1._GC-07-069-4-05	AG	AA	CC	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
2._RUQ_883	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
3._LP_4_/32_[POU]	GG	TT	CT	GG	_	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
4._LP_4_/32_[POU]	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
5._LP_4_/32_[POU]	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
6._LP_4_/32_[POU]	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
7._LP_4_/32_[POU]	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
8._LP_4_/32_[POU]	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
9._GC-07-069-4-05	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
10._GC-07-081-5-03	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
11._GC-07-081-5-03	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
12._GC-07-081-5-03	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
13._GC-07-081-5-03	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
14._RUQ_883	_	TT	CT	GG	CG	AC	CC	GG	AC	_	_	X_X	X_X	X_X
15._RUQ_883	_	_	_	AA	_	_	_	_	CC	_	_	X_X	X_X	X_X
16._RUQ_883	GG	TT	AG	GG	CG	AC	GG	CC	AC	AT	GG	X_X	X_X	X_X

Input profile: LP_4_/32_[POU]

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Mars Center for Cocoa Science, Brazil

Location: 7405 3 > FP

Dapeng Zhang, 2016

1._LP_4_/32_[POU] GC-07-069-4-05

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

2._LP_4_/32_[POU] RUQ_883

67.9 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._LP_4_/32_[POU]

65.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C752

Dapeng Zhang, 2016

4._LP_4_/32_[POU]

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 3 > FP

Dapeng Zhang, 2016

5._LP_4_/32_[POU]

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 4

Dapeng Zhang, 2016

6._LP_4_/32_[POU]

65.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7503 2

Dapeng Zhang, 2016

7._LP_4_/32_[POU]

65.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7503 1

Dapeng Zhang, 2016

8._LP_4_/32_[POU]

65.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7405 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._LP_4_/32_[POU] GC-07-069-4-05

65.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

10._LP_4_/32_[POU] GC-07-081-5-03

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

11._LP_4_/32_[POU] GC-07-081-5-03

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

12._LP_4_/32_[POU] GC-07-081-5-03

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

13._LP_4_/32_[POU] GC-07-081-5-03

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._LP_4_/32_[POU] RUQ_883

65.2 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

15._LP_4_/32_[POU] RUQ_883

61.5 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

16._LP_4_/32_[POU] RUQ_883

37.1 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25